Short Communication
Print
Short Communication
The phylogenetic positions of Bhagadatta Moore, 1898, Kumothales Overlaet, 1940 and Harmilla Aurivillius, 1892 (Lepidoptera, Nymphalidae, Limenitidinae) based on molecular data
expand article infoNiklas Wahlberg, Jana Maresova§|, Leidys Murillo-Ramos, Steve Collins#, Li-Wei Wu¤
‡ Lund University, Lund, Sweden
§ University of South Bohemia, Ceske Budejovice, Czech Republic
| Biology Centre, Czech Academy of Sciences, Ceske Budejovice, Czech Republic
¶ Universidad de Sucre, Sucre, Colombia
# African Butterfly Research Institute, Nairobi, Kenya
¤ National Taiwan University, Nantou, Taiwan
Open Access

Abstract

We sequenced multiple genes from the enigmatic genera Bhagadatta Moore, 1898, Kumothales Overlaet, 1940 and Harmilla Aurivillius, 1892 (Nymphalidae, Limenitidinae) and analysed them together with a large published dataset. We find that Bhagadatta is sister to the genera Cymothoe Hübner, 1819+Harma Doubleday, 1848, and that Kumothales is sister to these three. Harmilla is nested within the genus Euriphene Boisduval, 1847. We thus transfer Kumothales and Bhagadatta to the tribe Cymothoini, and we synonymise Harmilla syn. nov. with Euriphene.

Introduction

The systematics of the butterfly subfamily Limenitidinae has only recently started to unravel (Wahlberg et al. 2009; Dhungel and Wahlberg 2018; Wu et al. 2019). For a long time the subfamily was used as the “trash can” taxon for taxa that could not easily be placed in other subfamilies of the butterfly family Nymphalidae, including species now placed in the unrelated subfamilies Biblidinae, Pseudergolinae and Cyrestinae. Molecular data have clearly defined the subfamily (Wahlberg et al. 2003, 2009), and the latest comprehensive study has shown that the subfamily can be divided into seven strongly supported tribes, three of which were only recently described (Dhungel and Wahlberg 2018).

The study by Dhungel and Wahlberg (2018) attempted to sample all genera putatively belonging to Limenitidinae, but they were unable to sample the genera Kumothales Overlaet, 1940, Harmilla Aurivillius, 1892, Euryphurana Hecq, 1992, Euryphaedra Staudinger, 1891, and Neurosigma Butler, 1868. The phylogenetic positions, and hence the tribal affiliations, of these five genera have never been studied explicitly before, and they have all been provisionally placed in the tribe Adoliadini. The morphology of Harmilla, Euryphurana and Euryphaedra clearly place them close to other African Adoliadini of the genera Euriphene Boisduval, 1847, Euryphura Staudinger, 1891, and Euphaedra Hübner, 1819 (as suggested by the names of the latter two). The position of Neurosigma is likely close to the Asian members of Adoliadini, but this remains to be determined. The position of the monotypic Kumothales is not clear at the moment (Williams 2018).

In addition, Dhungel and Wahlberg (2018) could only include the COI sequences from a published mitogenome of Bhagadatta Moore, 1898 (Wu et al. 2014). The position of Bhagadatta as sister to Cymothoe Hübner, 1819+Harma Doubleday, 1848 was surprising, but poorly supported (Dhungel and Wahlberg 2018). Bhagadatta is a monotypic genus that is found from Assam to North of Indochina (Igarashi and Fukuda 2000), while Harma and Cymothoe comprise 83 species found only in sub-Saharan Africa (van Velzen et al. 2013).

Here we determine the phylogenetic positions of the genera Bhagadatta, Kumothales and Harmilla based on a multigene dataset. We analyse the new sequences with the dataset published by Dhungel and Wahlberg (2018) and revise the classification of Limenitidinae accordingly.

Material and methods

We sequenced specimens of Bhagadatta austenia (Moore, 1898), Kumothales inexpectata Overlaet, 1940, Harmilla elegans Aurivillius, 1892 and Harmilla hawkeri Joicey & Talbot, 1926 for one mitochondrial gene and several nuclear genes, depending on available resources. The following genes were sequenced for Bhagadatta: COI, EF1a, RpS5 and wingless. Kumothales was sequenced for ArgKin, COI, CycY, EF1a, GAPDH, MDH, PSb, RpS2 and wingless. Harmilla elegans was sequenced for ArgKin, COI, CycY, EF1a, GAPDH,RpS5 and wingless. Harmilla hawkeri for ArgKin, COI, CycY, EF1a, GAPDH, MDH, PolII, PSb, RpS2, RpS5, UDPG6DH and wingless. Molecular protocols followed published studies (Wahlberg and Wheat 2008; Wahlberg et al. 2016; Dhungel and Wahlberg 2018) and the data were combined with the dataset of Dhungel and Wahlberg (2018), which is based on 18 gene regions. All new sequences are available on NCBI GenBank with the accession numbers MT267731MT267775. Sequences were curated and managed using VoSeq (Peña and Malm 2012).

Phylogenetic analyses were carried out using IQ-TREE 1.6.10 (Nguyen et al. 2015) in a maximum likelihood framework. The data were partitioned by gene and analysed with the partition finding (Chernomor et al. 2016) and model finding (Kalyaanamoorthy et al. 2017) algorithms of IQ-TREE (using the command MFP+MERGE). Robustness of the results were assessed using UFBoot2 (Hoang et al. 2018) and a SH-like approximate likelihood ratio test (Guindon et al. 2010), each with 1000 replicates. Analyses were run on the CIPRES server (Miller et al. 2010).

Results

The phylogenetic positions of the three focal taxa were well supported (Fig. 1). Bhagadatta remains sister to Cymothoe+Harma with strong support, with Kumothales coming out sister to these three genera. Harmilla is clearly nested within the genus Euriphene, with H. elegans and H. hawkeri coming out expectedly as sister species.

Figure 1. 

Phylogenetic positions of Kumothales inexpectata, Bhagadatta austenia, Harmilla elegans and Harmilla hawkeri based on a multigene analysis. All other taxa taken from the study by Dhungel and Wahlberg (2018). Numbers to the left of each node are the values for the SH-like approximate likelihood ratio test/UltraFast Bootstrap calculated in IQ-TREE.

Discussion

Based on our results, the recently described Cymothoini (Dhungel and Wahlberg 2018) includes the monotypic genera Bhagadatta and Kumothales. Kumothales has been considered to be incertae sedis in Limenitidinae (Williams 2018). Our results place it without a doubt as sister to the rest of Cymothoini. The single species, K. inexpectata, is found in the rainforests of the Congo Basin. The position of the monotypic Bhagadatta as sister to Harma+Cymothoe continues to be surprising, but is now corroborated with more data. It appears that Bhagadatta has colonised Asia from Africa, as it is nested within the African clade Cymothoini.

Harmilla is nested well within Euriphene and thus we synonymise the former (syn. nov.) with Euriphene, making Euriphene elegans (comb. nov.) and Euriphene hawkeri (comb. nov.) the valid combinations for the species. Euriphene elegans and E. hawkeri are also restricted to the Congo Basin of Africa. According to Williams (2018), the taxon hawkeri is considered to be a subspecies of Euriphene elegans Aurivillius, 1892. However, our molecular results suggest that E. hawkeri is distinct genetically from E. elegans, with the DNA barcode (COI gene) showing a 4% K2P distance. This is comparable to other closely related sister species in Lepidoptera (Mutanen et al. 2016). Clearly this requires further study, but for now we suggest that the two taxa are considered as separate sister species.

Euriphene is a large genus with 75 (including E. elegans and E. hawkeri) described species (Williams 2018). Only seven species have been included in earlier molecular studies. Dhungel and Wahlberg (2018) show that several genera are closely related to Euriphene, with the monotypic Cynandra Schatz, 1887, being sister to the genus. The species poor Pseudargynnis Karsch, 1892, and Aterica Boisduval, 1833 (a total of three described species) form the sister clade to Euriphene+Cynandra. Whether Euriphene is monophyletic with regard to these three genera needs to be determined with greater taxon sampling of Euriphene. In addition, the genera Euryphura and Hamanumida Hübner, 1819 are sister to the aforementioned genera, and together all six genera form a strongly supported clade which is sister to the Asian Abrota ganga Moore, 1857. The so far unsampled monotypic genus Euryphurana is likely to belong to the Euriphene clade.

The pattern of a monotypic Asian genus being sister to a species rich African clade (AbrotaEuriphene clade) is mirrored in the BhagadattaCymothoe case, and it would be interesting to investigate biogeographic processes behind these two cases. Did the common ancestor of both clades colonise Asia from Africa (both are nested within African taxa)? Did this happen at around the same time? Answers to these questions would enhance our understanding of the evolutionary history of Nymphalidae as a whole.

In conclusion, molecular data have allowed us to determine the phylogenetic positions of previously enigmatic taxa, and through that given us a more stable classification. Within Limenitidinae, much work remains to be done. Three described genera have yet to be sequenced (Euryphurana, Euryphaedra, and Neurosigma). In addition, several recent studies have shown that various genera within Limenitidinae are not monophyletic (Ebel et al. 2015; Dhungel and Wahlberg 2018; Wu et al. 2019; Toussaint et al. 2020), suggesting that we have some way to go before we reach a stable classification for the second most species rich subfamily of Nymphalidae.

Acknowledgements

NW acknowledges funding from the Swedish Research Council (grant number 2015-04441). We are very grateful to Gilles Faravel for sending us fresh specimens of Euriphene elegans. We thank Oskar Brattström for constructive comments on the manuscript.

References

  • Chernomor O, von Haeseler A, Minh BQ (2016) Terrace aware data structure for phylogenomic inference from supermatrices. Systematic Biology 65: 997–1008. https://doi.org/10.1093/sysbio/syw037
  • Ebel ER, DaCosta JM, Sorenson MD, Hill RI, Briscoe AD, Willmott KR, Mullen SP (2015) Rapid diversification associated with ecological specialization in Neotropical Adelpha butterflies. Molecular Ecology 24: 2392–2405. https://doi.org/10.1111/mec.13168
  • Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate Maximum-Likelihood phylogenies: Assessing the performance of PhyML 3.0. Systematic Biology 59: 307–321. https://doi.org/10.1093/sysbio/syq010
  • Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution 35: 518–522. https://doi.org/10.1093/molbev/msx281
  • Igarashi S, Fukuda H (2000) The life histories of Asian butterflies (Vol. 2). Tokai University Press, Tokyo, 742 pp.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods 14: 587–589. https://doi.org/10.1038/nmeth.4285
  • Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for Inference of Large Phylogenetic Trees. Proceedings of the Gateway Computing Environments Workshop (GCE), New Orleans. https://doi.org/10.1109/GCE.2010.5676129
  • Mutanen M, Kivelä SM, Vos RA, Doorenweerd C, Ratnasingham S, Hausmann A, Huemer P, Dinca V, Nieukerken EJv, Lopez-Vaamonde C, Vila R, Aarvik L, Decaëns T, Efetov KA, Hebert PDN, Johnsen A, Karsholt O, Pentinsaari M, Rougerie R, Segerer A, Tarmann G, Zahiri R, Godfray HCJ (2016) Species-level para- and polyphyly in DNA barcode gene trees: strong operational bias in European Lepidoptera. Systematic Biology 65: 1024–1040.https://doi.org/10.1093/sysbio/syw044
  • Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology and Evolution 32: 268–274. https://doi.org/10.1093/molbev/msu300
  • Toussaint EFA, Müller CJ, Morinière J, Tänzler R, Balke M (2020) A glide over the Indo-Australian geological maze: repeated transgressions of Lydekker’s and Wallace’s Lines in archdukes, barons and dukes (Nymphalidae: Limenitidinae: Adoliadini). Biological Journal of the Linnean Society 129: 810–821. https://doi.org/10.1093/biolinnean/blaa008
  • van Velzen R, Wahlberg N, Sosef MSM, Bakker FT (2013) Effects of changing climate and host plant association on species diversification rates in Cymothoe (Lepidoptera, Nymphalidae) tropical forest butterflies. Biological Journal of the Linnean Society 108: 546–564. https://doi.org/10.1111/bij.12012
  • Wahlberg N, Leneveu J, Kodandaramaiah U, Peña C, Nylin S, Freitas AVL, Brower AVZ (2009) Nymphalid butterflies diversify following near demise at the Cretaceous/Tertiary boundary. Proceedings of the Royal Society of London B Biological Sciences 276: 4295–4302. https://doi.org/10.1098/rspb.2009.1303
  • Wahlberg N, Weingartner E, Nylin S (2003) Towards a better understanding of the higher systematics of Nymphalidae (Lepidoptera: Papilionoidea). Molecular Phylogenetics and Evolution 28: 473–484. https://doi.org/10.1016/S1055-7903(03)00052-6
  • Wahlberg N, Wheat CW (2008) Genomic outposts serve the phylogenomic pioneers: designing novel nuclear markers for genomic DNA extractions of Lepidoptera. Systematic Biology 57: 231–242. https://doi.org/10.1080/10635150802033006
  • Wu L-W, Chiba H, Lees DC, Ohshima Y, Jeng M-L (2019) Unravelling relationships among the shared stripes of sailors: Mitogenomic phylogeny of Limenitidini butterflies (Lepidoptera, Nymphalidae, Limenitidinae), focusing on the genera Athyma and Limenitis. Molecular Phylogenetics and Evolution 130: 60–66. https://doi.org/10.1016/j.ympev.2018.09.020
  • Wu L-W, Lin L-H, Lees DC, Hsu Y-F (2014) Mitogenomic sequences effectively recover relationships within brush-footed butterflies (Lepidoptera: Nymphalidae). BMC Genomics 15: 1–468. https://doi.org/10.1186/1471-2164-15-468
login to comment